Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LGG | rs12258388 | chr10:932956 | A/G | 4.13E-6 | 404 | 15.13 | 17.73 | 10.57 | KM Plot |
| LGG | rs12260800 | chr10:927933 | T/C | 2.55E-6 | 406 | 15.17 | 17.38 | 10.57 | KM Plot |
| LGG | rs12261911 | chr10:938625 | G/A | 3.61E-5 | 405 | 14.9 | 17.73 | 12.17 | KM Plot |
| LGG | rs12263219 | chr10:63319457 | T/C | 8.28E-5 | 405 | 15.88 | 11.53 | 17.07 | KM Plot |
| LGG | rs12264711 | chr10:929525 | T/C | 4.7E-6 | 407 | 15.17 | 17.03 | 10.57 | KM Plot |
| LGG | rs12266469 | chr10:6387754 | A/G | 2.28E-6 | 407 | 0 | 11.57 | 15.47 | KM Plot |
| LGG | rs12266719 | chr10:89967339 | A/T | 2.39E-6 | 407 | 14.78 | 18.72 | 8.97 | KM Plot |
| LGG | rs12267116 | chr10:63307297 | C/T | 5.45E-5 | 407 | 18.7 | 12.03 | 15.73 | KM Plot |
| LGG | rs12267709 | chr10:938540 | C/T | 3.61E-5 | 405 | 14.9 | 17.73 | 12.17 | KM Plot |
| LGG | rs12274289 | chr11:2956947 | G/C | 3.57E-5 | 400 | 15.57 | 14.73 | 15.53 | KM Plot |
| LGG | rs12281407 | chr11:2990378 | G/A | 0.000168 | 398 | 15.6 | 13.7 | 11.8 | KM Plot |
| LGG | rs12292300 | chr11:3001814 | G/A | 0.000225 | 400 | 15.57 | 13.23 | 11.8 | KM Plot |
| LGG | rs12304673 | chr12:12438030 | A/G | 1.89E-8 | 404 | 15.33 | 15.62 | 6.63 | KM Plot |
| LGG | rs12337971 | chr9:26817300 | G/C | 5.16E-5 | 399 | 14.83 | 16.73 | 13 | KM Plot |
| LGG | rs12339363 | chr9:24028597 | C/T | 1.46E-9 | 407 | 15.6 | 13.02 | 17.07 | KM Plot |